5 Jun 2008 clm close 1.007-grumpy-gryphon, 08-157
clm close - Fetch connected components from graphs or subgraphs
clmclose is not in actual fact a program. This manual page documents the behaviour and options of the clm program when invoked in mode close. The options -h, --apropos, --version, -set, --nop are accessible in all clm modes. They are described in the clm manual page.
clm close -imx <fname> [options]
clm close -imx fname (input file) -dom fname (input domain/cluster file) [-write-cc fname (output file)] [-cc-bound num (select components with size at least num)] [-tf spec (apply tf-spec to input matrix)] [-h (print synopsis, exit)] [--apropos (print synopsis, exit)] [--version (print version, exit)]
Use clm close to fetch the connected components from a graph. They will be returned as a clustering file. Use this file in conjunction with mcxsubs and the graph file itself to retrieve individual subgraphs corresponding to connected components.
If the -dom fname option is used, clm close will for each of the domains in file fname retrieve the associated subgraph from the input graph, decompose it into its connected components, and write each connected components as a separate domain/cluster in the output file.
| -imx fname (input file) | ||
| -dom fname (input domain/cluster file) | ||
| -write-cc fname (output connected components) | ||
Set the name of the file to be written to. | ||
| -cc-bound num (select components with size at least num) | ||
| -tf spec (apply tf-spec to input matrix) | ||
Transform the input matrix values according to the syntax described in mcxio. | ||